Index

_

__init__() (lingam.ABICLiNGAM method) (lingam.BootstrapResult method) (lingam.BottomUpParceLiNGAM method) (lingam.CAMUV method) (lingam.CausalEffect method) (lingam.DirectLiNGAM method) (lingam.GroupDirectLiNGAM method) (lingam.GroupLiNGAM method) (lingam.HighDimDirectLiNGAM method) (lingam.ICALiNGAM method) (lingam.LEWIS method) (lingam.LiM method) (lingam.LiNA method) (lingam.LongitudinalBootstrapResult method) (lingam.LongitudinalLiNGAM method) (lingam.MDLiNA method) (lingam.mLiNGAM method) (lingam.MultiGroupCAMUV method) (lingam.MultiGroupDirectLiNGAM method) (lingam.MultiGroupRCD method) (lingam.MultiGroupRESIT method) (lingam.RCD method) (lingam.RESIT method) (lingam.utils.MGGD method) (lingam.utils.MGGDEstimator method) (lingam.VARBootstrapResult method) (lingam.VARLiNGAM method) (lingam.VARMABootstrapResult method) (lingam.VARMALiNGAM method)

A

ABICLiNGAM (class in lingam) adjacency_matrices_ (lingam.BootstrapResult property) (lingam.LongitudinalBootstrapResult property) (lingam.LongitudinalLiNGAM property) (lingam.MultiGroupDirectLiNGAM property) (lingam.MultiGroupRCD property) (lingam.MultiGroupRESIT property) (lingam.VARBootstrapResult property) (lingam.VARLiNGAM property) (lingam.VARMABootstrapResult property) (lingam.VARMALiNGAM property) adjacency_matrix_ (lingam.ABICLiNGAM property) (lingam.BottomUpParceLiNGAM property) (lingam.CAMUV property) (lingam.DirectLiNGAM property) (lingam.GroupDirectLiNGAM property) (lingam.GroupLiNGAM property) (lingam.HighDimDirectLiNGAM property) (lingam.ICALiNGAM property) (lingam.LiM property) (lingam.LiNA property) (lingam.MDLiNA property) (lingam.mLiNGAM property) (lingam.MultiGroupCAMUV property) (lingam.MultiGroupDirectLiNGAM property) (lingam.RCD property) (lingam.RESIT property)

ancestors_list_ (lingam.MultiGroupRCD property) (lingam.RCD property)

B

bic_select_logistic_l1() (in module lingam.utils) bootstrap() (lingam.ABICLiNGAM method) (lingam.BottomUpParceLiNGAM method) (lingam.DirectLiNGAM method) (lingam.GroupDirectLiNGAM method) (lingam.GroupLiNGAM method) (lingam.HighDimDirectLiNGAM method) (lingam.ICALiNGAM method) (lingam.LongitudinalLiNGAM method) (lingam.mLiNGAM method) (lingam.MultiGroupDirectLiNGAM method) (lingam.MultiGroupRCD method) (lingam.MultiGroupRESIT method) (lingam.RCD method) (lingam.RESIT method) (lingam.VARLiNGAM method) (lingam.VARMALiNGAM method)

bootstrap_with_imputation() (in module lingam.tools) BootstrapResult (class in lingam) BottomUpParceLiNGAM (class in lingam)

C

calculate_distance_from_root_nodes() (in module lingam.utils) calculate_total_effect() (in module lingam.utils) CAMUV (class in lingam) causal_order_ (lingam.ABICLiNGAM property) (lingam.BottomUpParceLiNGAM property) (lingam.DirectLiNGAM property) (lingam.GroupDirectLiNGAM property) (lingam.GroupLiNGAM property) (lingam.HighDimDirectLiNGAM property) (lingam.ICALiNGAM property) (lingam.mLiNGAM property) (lingam.MultiGroupDirectLiNGAM property) (lingam.MultiGroupRESIT property) (lingam.RESIT property) (lingam.VARLiNGAM property) (lingam.VARMALiNGAM property)

causal_orders_ (lingam.LongitudinalLiNGAM property) CausalEffect (class in lingam) coefficient_matrix_ (lingam.ABICLiNGAM property)

D

DirectLiNGAM (class in lingam)

E

error_covariance_matrix_ (lingam.ABICLiNGAM property) estimate_effects_on_prediction() (lingam.CausalEffect method) estimate_optimal_intervention() (lingam.CausalEffect method) estimate_total_effect() (lingam.ABICLiNGAM method) (lingam.BottomUpParceLiNGAM method) (lingam.DirectLiNGAM method) (lingam.HighDimDirectLiNGAM method) (lingam.ICALiNGAM method) (lingam.LongitudinalLiNGAM method) (lingam.mLiNGAM method) (lingam.MultiGroupDirectLiNGAM method) (lingam.MultiGroupRCD method) (lingam.MultiGroupRESIT method) (lingam.RESIT method) (lingam.VARLiNGAM method) (lingam.VARMALiNGAM method)

estimate_total_effect2() (lingam.BottomUpParceLiNGAM method) (lingam.LongitudinalLiNGAM method) (lingam.MultiGroupDirectLiNGAM method) (lingam.MultiGroupRCD method) (lingam.VARLiNGAM method) (lingam.VARMALiNGAM method) evaluate_model_fit() (in module lingam.utils) extract_ancestors() (in module lingam.utils)

F

f_correlation() (in module lingam.utils) find_all_paths() (in module lingam.utils) fit() (lingam.ABICLiNGAM method) (lingam.BottomUpParceLiNGAM method) (lingam.CAMUV method) (lingam.DirectLiNGAM method) (lingam.GroupDirectLiNGAM method) (lingam.GroupLiNGAM method) (lingam.HighDimDirectLiNGAM method) (lingam.ICALiNGAM method) (lingam.LiM method) (lingam.LiNA method) (lingam.LongitudinalLiNGAM method) (lingam.MDLiNA method) (lingam.mLiNGAM method) (lingam.MultiGroupCAMUV method) (lingam.MultiGroupDirectLiNGAM method) (lingam.MultiGroupRCD method) (lingam.MultiGroupRESIT method) (lingam.RCD method) (lingam.RESIT method) (lingam.utils.MGGDEstimator method) (lingam.VARLiNGAM method) (lingam.VARMALiNGAM method)

G

get_causal_direction_counts() (lingam.BootstrapResult method) (lingam.LongitudinalBootstrapResult method) (lingam.VARBootstrapResult method) (lingam.VARMABootstrapResult method) get_common_edge_probabilities() (in module lingam.utils) get_directed_acyclic_graph_counts() (lingam.BootstrapResult method) (lingam.LongitudinalBootstrapResult method) (lingam.VARBootstrapResult method) (lingam.VARMABootstrapResult method) get_error_independence_p_values() (lingam.ABICLiNGAM method) (lingam.BottomUpParceLiNGAM method) (lingam.DirectLiNGAM method) (lingam.HighDimDirectLiNGAM method) (lingam.ICALiNGAM method) (lingam.LongitudinalLiNGAM method) (lingam.mLiNGAM method) (lingam.MultiGroupDirectLiNGAM method) (lingam.MultiGroupRCD method) (lingam.MultiGroupRESIT method) (lingam.RCD method) (lingam.RESIT method) (lingam.VARLiNGAM method) (lingam.VARMALiNGAM method)

get_exo_variables() (in module lingam.utils) get_paths() (lingam.BootstrapResult method) (lingam.LongitudinalBootstrapResult method) (lingam.VARBootstrapResult method) (lingam.VARMABootstrapResult method) get_probabilities() (lingam.BootstrapResult method) (lingam.LongitudinalBootstrapResult method) (lingam.VARBootstrapResult method) (lingam.VARMABootstrapResult method) get_scores() (lingam.LEWIS method) get_sink_variables() (in module lingam.utils) get_total_causal_effects() (lingam.BootstrapResult method) (lingam.LongitudinalBootstrapResult method) (lingam.VARBootstrapResult method) (lingam.VARMABootstrapResult method) GroupDirectLiNGAM (class in lingam) GroupLiNGAM (class in lingam)

H

HighDimDirectLiNGAM (class in lingam)

I

ICALiNGAM (class in lingam)

L

LEWIS (class in lingam) likelihood_i() (in module lingam.utils) LiM (class in lingam) LiNA (class in lingam) lingam module, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26]

lingam.tools module lingam.utils module log_p_super_gaussian() (in module lingam.utils) LongitudinalBootstrapResult (class in lingam) LongitudinalLiNGAM (class in lingam)

M

make_dot() (in module lingam.utils) make_dot_for_nan_probability_matrix() (in module lingam.utils) make_prior_knowledge() (in module lingam.utils) MDLiNA (class in lingam) measurement_matrix_ (lingam.LiNA property) (lingam.MDLiNA property) MGGD (class in lingam.utils) MGGDEstimator (class in lingam.utils)

mLiNGAM (class in lingam) module lingam, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26] lingam.tools lingam.utils MultiGroupCAMUV (class in lingam) MultiGroupDirectLiNGAM (class in lingam) MultiGroupRCD (class in lingam) MultiGroupRESIT (class in lingam)

P

predict_adaptive_lasso() (in module lingam.utils) print_causal_directions() (in module lingam.utils)

print_common_edge_directions() (in module lingam.utils) print_dagc() (in module lingam.utils)

R

RCD (class in lingam) remove_effect() (in module lingam.utils) resampled_indices_ (lingam.BootstrapResult property) (lingam.VARBootstrapResult property) (lingam.VARMABootstrapResult property)

residuals_ (lingam.LongitudinalLiNGAM property) (lingam.VARLiNGAM property) (lingam.VARMALiNGAM property) RESIT (class in lingam) rvs() (lingam.utils.MGGD method)

T

total_effects_ (lingam.BootstrapResult property) (lingam.LongitudinalBootstrapResult property) (lingam.VARBootstrapResult property) (lingam.VARMABootstrapResult property)

V

VARBootstrapResult (class in lingam) variance_i() (in module lingam.utils) VARLiNGAM (class in lingam)

VARMABootstrapResult (class in lingam) VARMALiNGAM (class in lingam) visualize_nonlinear_causal_effect() (in module lingam.utils)